Wiki Update part 4 (#9872)

* How to wiki

* Local images + pressure-advance realocation

* fill patterns WIP

+ Patch Until they fix this: https://github.com/orgs/community/discussions/118296

* Wiki images update 8fff1ca

Updated images with new style from commit 8fff1ca (pr: #9797)

* Internal Wiki Links + standardization

* Update Flow Calibration image

Co-Authored-By: Dowsha3d <216038220+dowsha3d@users.noreply.github.com>

* Seam wiki merge

* Updated Wiki Home

* MD Final lines

* How to index

---------

Co-authored-by: Dowsha3d <216038220+dowsha3d@users.noreply.github.com>

doc/developer-reference/Preset-and-bundle.md

@@ -1,27 +1,27 @@
 This page deals with the explanation for 3 classes in the code.
 
-## [`Preset`](../../src/libslic3r/Preset.hpp)
+## [`Preset`](https://github.com/SoftFever/OrcaSlicer/blob/main/src/libslic3r/Preset.hpp)
 
 As the name might suggest this class deals with presets for various things. It defines an enum `Type` which basically tells you what kind of data the present contains. Below are a few explained and there corresponding UI elements
 
-> [!Warning]
+> [!WARNING]
 > There is a lot of outdated and legacy code in the code base.
 
 - `TYPE_PRINT`: Refers to a process preset. It's called 'Print' probably due to some legacy code.
 
-<img src="../images/process-preset.png" alt="Example Image" width="320">
+![process-preset](https://github.com/SoftFever/OrcaSlicer/blob/main/doc/images/process-preset.png?raw=true)
 
 - `TYPE_FILAMENT`: As the name suggests this preset is for filaments
 
-<img src="../images/filament-preset.png" alt="Example Image" width="320">
+![filament-preset](https://github.com/SoftFever/OrcaSlicer/blob/main/doc/images/filament-preset.png?raw=true)
 
 - `TYPE_PRINTER`: Preset for printers.
 
-<img src="../images/printer-preset.png" alt="Example Image" width="320">
+![printer-preset](https://github.com/SoftFever/OrcaSlicer/blob/main/doc/images/printer-preset.png?raw=true)
 
 There are other preset types but some of them are for SLA. Which is legacy code, since SLA printers are no longer supported. Above 3 are the important types.
 
-## [`PresetBundle`](../../src/libslic3r/PresetBundle.hpp)
+## [`PresetBundle`](https://github.com/SoftFever/OrcaSlicer/blob/main/src/libslic3r/PresetBundle.hpp)
 
 This is a bundle containing a few types of `PresetCollection`. One bundle has presets for some printers, filaments and some processes (TYPE_PRINT).
 
@@ -34,7 +34,7 @@ each one of these contains a collection of processes, filaments and printers res
 > [!IMPORTANT]
 > Printers, filaments and processes in the bundle don't all have to be compatible with each other. In fact all the saved presets are stored in one `PresetBundle`. The `PresetBundle` is loaded on start up. The list of filaments and processes shown for a particular printer is a subset of `filaments` and `prints` `PresetCollection`s.
 
-## [`PresetCollection`](../../src/libslic3r/Preset.hpp)
+## [`PresetCollection`](https://github.com/SoftFever/OrcaSlicer/blob/main/src/libslic3r/Preset.hpp)
 
 `PrinterPresetCollection` is a class derived from `PresetCollection`.
 

doc/developer-reference/plater-sidebar-tab-combobox.md

@@ -10,13 +10,13 @@ Refers to the entire application. The whole view, file loading, project saving a
 
 This is relating the the sidebar in the application window
 
-![tab-popup](https://github.com/SoftFever/OrcaSlicer/blob/main/doc/images/full-sidebar.png?raw=true)
+![full-sidebar](https://github.com/SoftFever/OrcaSlicer/blob/main/doc/images/full-sidebar.png?raw=true)
 
 ## [`ComboBox`](https://github.com/SoftFever/OrcaSlicer/blob/main/src/slic3r/GUI/Widgets/ComboBox.hpp)
 
 The drop down menus where you can see and select presets
 
-![tab-popup](https://github.com/SoftFever/OrcaSlicer/blob/main/doc/images/combobox.png?raw=true)
+![combobox](https://github.com/SoftFever/OrcaSlicer/blob/main/doc/images/combobox.png?raw=true)
 
 ## [`Tab`](https://github.com/SoftFever/OrcaSlicer/blob/main/src/slic3r/GUI/Tab.hpp)
 

doc/developer-reference/slicing-hierarchy.md

@@ -2,4 +2,43 @@
 
 The Slicing logic is not the easiest to locate in the code base. Below is a flow diagram of function calls that are made after clicking the `Slice Plate` button in the UI. Most of the processing happens in different threads. Note the calls after `BackgroundSlicingProcess::start()`, but this is how you can find the slicing logic.
 
-<img src="../images/slicing_call_heirarchy.svg" alt="Example Image" width="320">
+```mermaid
+flowchart TD
+    A["Slice plate"] --> B["void Plater::priv::on_action_slice_plate(SimpleEvent&)"]
+    B --> C["void Plater::reslice()"]
+    C --> D["bool Plater::priv::restart_background_process(unsigned int state)"]
+    D --> E["bool BackgroundSlicingProcess::start()"]
+    E --> F["void BackgroundSlicingProcess::thread_proc_safe_seh_throw()"]
+    F --> G["unsigned long BackgroundSlicingProcess::thread_proc_safe_seh()"]
+    G --> H["void BackgroundSlicingProcess::thread_proc_safe()"]
+    H --> I["void BackgroundSlicingProcess::thread_proc()"]
+    I --> J["void BackgroundSlicingProcess::call_process_seh_throw(std::exception_ptr &ex)"]
+    J --> K["unsigned long BackgroundSlicingProcess::call_process_seh(std::exception_ptr &ex)"]
+    K --> L["void BackgroundSlicingProcess::call_process(std::exception_ptr &ex)"]
+    L --> M["void BackgroundSlicingProcess::process_fff()"]
+    M --> N["void Print::process(long long *time_cost_with_cache, bool use_cache)"]
+    N --> O["void PrintObject::make_perimeters()"]
+    O --> P["void PrintObject::slice()"]
+
+    %% Labels for libraries
+    subgraph G1 [libSlic3r_gui]
+        B
+        C
+        D
+        E
+        F
+        G
+        H
+        I
+        J
+        K
+        L
+        M
+    end
+
+    subgraph G2 [libSlic3r]
+        N
+        O
+        P
+    end
+```