Building igl statically and moving to the dep scripts

Fixing dep build script on Windows and removing some warnings.

Use bundled igl by default.

Not building with the dependency scripts if not explicitly stated. This way, it will stay in
Fix the libigl patch to include C source files in header only mode.

src/libigl/igl/boundary_conditions.cpp

@@ -0,0 +1,192 @@
+// This file is part of libigl, a simple c++ geometry processing library.
+// 
+// Copyright (C) 2013 Alec Jacobson <alecjacobson@gmail.com>
+// 
+// This Source Code Form is subject to the terms of the Mozilla Public License 
+// v. 2.0. If a copy of the MPL was not distributed with this file, You can 
+// obtain one at http://mozilla.org/MPL/2.0/.
+#include "boundary_conditions.h"
+
+#include "verbose.h"
+#include "EPS.h"
+#include "project_to_line.h"
+
+#include <vector>
+#include <map>
+#include <iostream>
+
+IGL_INLINE bool igl::boundary_conditions(
+  const Eigen::MatrixXd & V  ,
+  const Eigen::MatrixXi & /*Ele*/,
+  const Eigen::MatrixXd & C  ,
+  const Eigen::VectorXi & P  ,
+  const Eigen::MatrixXi & BE ,
+  const Eigen::MatrixXi & CE ,
+  Eigen::VectorXi &       b  ,
+  Eigen::MatrixXd &       bc )
+{
+  using namespace Eigen;
+  using namespace std;
+
+  if(P.size()+BE.rows() == 0)
+  {
+    verbose("^%s: Error: no handles found\n",__FUNCTION__);
+    return false;
+  }
+
+  vector<int> bci;
+  vector<int> bcj;
+  vector<double> bcv;
+
+  // loop over points
+  for(int p = 0;p<P.size();p++)
+  {
+    VectorXd pos = C.row(P(p));
+    // loop over domain vertices
+    for(int i = 0;i<V.rows();i++)
+    {
+      // Find samples just on pos
+      //Vec3 vi(V(i,0),V(i,1),V(i,2));
+      // EIGEN GOTCHA:
+      // double sqrd = (V.row(i)-pos).array().pow(2).sum();
+      // Must first store in temporary
+      VectorXd vi = V.row(i);
+      double sqrd = (vi-pos).squaredNorm();
+      if(sqrd <= FLOAT_EPS)
+      {
+        //cout<<"sum((["<<
+        //  V(i,0)<<" "<<
+        //  V(i,1)<<" "<<
+        //  V(i,2)<<"] - ["<<
+        //  pos(0)<<" "<<
+        //  pos(1)<<" "<<
+        //  pos(2)<<"]).^2) = "<<sqrd<<endl;
+        bci.push_back(i);
+        bcj.push_back(p);
+        bcv.push_back(1.0);
+      }
+    }
+  }
+
+  // loop over bone edges
+  for(int e = 0;e<BE.rows();e++)
+  {
+    // loop over domain vertices
+    for(int i = 0;i<V.rows();i++)
+    {
+      // Find samples from tip up to tail
+      VectorXd tip = C.row(BE(e,0));
+      VectorXd tail = C.row(BE(e,1));
+      // Compute parameter along bone and squared distance
+      double t,sqrd;
+      project_to_line(
+          V(i,0),V(i,1),V(i,2),
+          tip(0),tip(1),tip(2),
+          tail(0),tail(1),tail(2),
+          t,sqrd);
+      if(t>=-FLOAT_EPS && t<=(1.0f+FLOAT_EPS) && sqrd<=FLOAT_EPS)
+      {
+        bci.push_back(i);
+        bcj.push_back(P.size()+e);
+        bcv.push_back(1.0);
+      }
+    }
+  }
+
+  // loop over cage edges
+  for(int e = 0;e<CE.rows();e++)
+  {
+    // loop over domain vertices
+    for(int i = 0;i<V.rows();i++)
+    {
+      // Find samples from tip up to tail
+      VectorXd tip = C.row(P(CE(e,0)));
+      VectorXd tail = C.row(P(CE(e,1)));
+      // Compute parameter along bone and squared distance
+      double t,sqrd;
+      project_to_line(
+          V(i,0),V(i,1),V(i,2),
+          tip(0),tip(1),tip(2),
+          tail(0),tail(1),tail(2),
+          t,sqrd);
+      if(t>=-FLOAT_EPS && t<=(1.0f+FLOAT_EPS) && sqrd<=FLOAT_EPS)
+      {
+        bci.push_back(i);
+        bcj.push_back(CE(e,0));
+        bcv.push_back(1.0-t);
+        bci.push_back(i);
+        bcj.push_back(CE(e,1));
+        bcv.push_back(t);
+      }
+    }
+  }
+
+  // find unique boundary indices
+  vector<int> vb = bci;
+  sort(vb.begin(),vb.end());
+  vb.erase(unique(vb.begin(), vb.end()), vb.end());
+
+  b.resize(vb.size());
+  bc = MatrixXd::Zero(vb.size(),P.size()+BE.rows());
+  // Map from boundary index to index in boundary
+  map<int,int> bim;
+  int i = 0;
+  // Also fill in b
+  for(vector<int>::iterator bit = vb.begin();bit != vb.end();bit++)
+  {
+    b(i) = *bit;
+    bim[*bit] = i;
+    i++;
+  }
+
+  // Build BC
+  for(i = 0;i < (int)bci.size();i++)
+  {
+    assert(bim.find(bci[i]) != bim.end());
+    bc(bim[bci[i]],bcj[i]) = bcv[i];
+  }
+
+  // Normalize across rows so that conditions sum to one
+  for(i = 0;i<bc.rows();i++)
+  {
+    double sum = bc.row(i).sum();
+    assert(sum != 0 && "Some boundary vertex getting all zero BCs");
+    bc.row(i).array() /= sum;
+  }
+
+  if(bc.size() == 0)
+  {
+    verbose("^%s: Error: boundary conditions are empty.\n",__FUNCTION__);
+    return false;
+  }
+
+  // If there's only a single boundary condition, the following tests
+  // are overzealous.
+  if(bc.cols() == 1)
+  {
+    // If there is only one weight function,
+    // then we expect that there is only one handle.
+    assert(P.rows() + BE.rows() == 1);
+    return true;
+  }
+
+  // Check that every Weight function has at least one boundary value of 1 and
+  // one value of 0
+  for(i = 0;i<bc.cols();i++)
+  {
+    double min_abs_c = bc.col(i).array().abs().minCoeff();
+    double max_c = bc.col(i).maxCoeff();
+    if(min_abs_c > FLOAT_EPS)
+    {
+      verbose("^%s: Error: handle %d does not receive 0 weight\n",__FUNCTION__,i);
+      return false;
+    }
+    if(max_c< (1-FLOAT_EPS))
+    {
+      verbose("^%s: Error: handle %d does not receive 1 weight\n",__FUNCTION__,i);
+      return false;
+    }
+  }
+
+  return true;
+}